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Turkish Journal of Biology

Abstract

Background/aim: Limited drug development and increased antibiotic tolerance among Gram-negative bacteria have led researchers to consider combination therapy. Actinomycin derivatives, particularly actinomycin D, exhibit a wide range of bioactivities, including antibacterial effects. However, actinomycin D is less effective against Gram-negative pathogens. Therefore, it is essential to demonstrate the synergy of actinomycin D and its derivatives with clinically known antibiotics against Escherichia coli ATCC 25922 and investigate the effects on cellular morphology.

Materials and methods: Streptomyces parvus 35M1 isolated from coastal sediment in İzmir/Türkiye was identified via genome sequencing. Large-scale (30 L) fermentation followed by chromatographic purification yielded compounds 1 (actinomycin D), 2 (actinomycin X2), and 3 (actinomycin X0ß), structurally confirmed by NMR spectroscopy. Later, checkerboard assays were used to assess combinatorial interactions with clinically relevant antibiotics in triplicate across two independent biological replicates. Synergistic interactions were evaluated in SynergyFinder using Zero Interaction Potency, Highest Single Agent, Loewe Additivity, and Bliss Independence models. Morphological alterations under synergistic treatments were examined via scanning electron microscopy.

Results: Individual actinomycins exhibited weak antimicrobial activity (MICs > 100 μM). Nevertheless, strong synergistic effects were actinomycins D and X2 combinations with polymyxin B and kanamycin (Most Synergistic Area scores >10). Relatively high synergy scores were obtained for the actinomycin X2-polymyxin B combination, with values of 33.49, 32.69, 33.98, and 38.18 in the Loewe, Bliss, ZIP, and HSA models, respectively. Only actinomycin X2 synergized with nalidixic acid (MSAs ≥13.49 ± 2.63), while all actinomycins displayed additive/indifferent effects with rifampicin and ampicillin. Further, SEM analysis revealed cellular deformation, including elongation, membrane rupture, and dent formation.

Conclusion: This work represents the first multimodel synergy analysis of actinomycin analogs against E. coli, underscoring their potential. However, these findings are limited to in vitro assays on a single reference strain; thus, further validation with in vivo models will be necessary.

Author ORCID Identifier

ÖZGE CAN: 0000-0002-3203-645X

MUSTAFA KURT: 0000-0001-5702-8168

MELİS KÜÇÜKSOLAK: 0000-0003-1619-4850

ATAÇ UZEL: 0000-0002-1304-0509

ERDAL BEDİR: 0000-0003-1262-063X

DOI

10.55730/1300-0152.2787

Keywords

Actinomycetes, dactinomycin, drug synergism, Escherichia coli

First Page

17

Last Page

28

Publisher

The Scientific and Technological Research Council of Türkiye (TÜBİTAK)

Creative Commons License

Creative Commons Attribution 4.0 International License
This work is licensed under a Creative Commons Attribution 4.0 International License.

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